Did I make a good choice with my college?

It's not always the school...it's what you make of it. You made a wise choice if you visited them both, talked to current students/counselors. and chose the one that felt more like home to you. They are both good schools though. Emory is a little better, but you're in Baylor's honors college so it shouldn't be of much difference when applying to medical school. A college that feels like home is a must, especially if you're pre-med. Good Luck with college!